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So the 1st thought to resolve this might be to make use of your create_a_pathway perform and create an array that looks like this: [substrate, enzyme, product or service] (eg. [A, enzymeA2B, B])and drive it into a worldwide array which acts like a container. In order to get hold of your total pathway(instance pathway A -> C) you would need to discover the array as part of your container that commences that has a and you'd probably then see the product or service is B so now you would need to look for the array that starts with B and after that take a look what the products is.
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Let's take a look at how a dictionary in python looks like and let's get started with a few programming. Visualize the following basic graph (sorry it seems this link Awful, but thats the ideal I can do Using the little shit EeePC I have with me on family vacation). In python it might look like this :
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I might try out making flags for command line amount interactions. It will assist you to instantly control the code from the command line if written properly.
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